SNP Profiles of GU 133 /C   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
1._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
2._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
3._GC-01-116-6-13
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
4._GC-01-116-6-13
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
5._GC-01-116-6-13
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
6._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
7._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
8._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
9._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
10._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
11._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
12._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
13._GC-01-116-6-13
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
14._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
15._GC-08-164-4-07
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
16._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
17._GU_133_/C
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
18._GU_133_/C
CCGGCGCCTTTT_CCCCAAGGCCGGCC
19._GC-08-164-4-07
CCGGCGCCTTTT_CCCCAAGGCCGGCC
20._GC-01-116-6-13
CCGGCGCC_TT_CCCCAAGGCCGGCC
21._GU_133_/C
CCGGCGCC_TT_CCCCAAGGCCGGCC
22._RUQ_190
_GGCGCC__TT____CCGG_
23._RUQ_190
CCGGCGCCTTTTTTCCCCAAGGCCGGCC
24._RUQ_190
__CG___TT_CC_GG_GG_
25._RUQ_190
__CG________CC_CC
26._GC-01-116-6-13
GGGGCGGGAAAAAA__AAGGGGGGGG
27._MITC-000670
GGGGCGGGAAAAAA__AAGGGGGGGG
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGGGCCACCCGGCCAAGG
1._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGCCAAGG
2._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGCCAAGG
3._GC-01-116-6-13
AAGGCCCCGGGGGGCCACCCGGCCAAGG
4._GC-01-116-6-13
AAGGCCCCGGGGGGCCACCCGGCCAAGG
5._GC-01-116-6-13
AAGGCCCCGGGGGGCCACCCGGCCAAGG
6._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
7._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
8._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
9._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
10._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
11._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGCCAAGG
12._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
13._GC-01-116-6-13
AAGGCCCCGGGGGGCCACCCGGCCAAGG
14._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGCCAAGG
15._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGG_AAGG
16._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
17._GU_133_/C
AAGGCCCCGGGGGGCCACCCGG_AAGG
18._GU_133_/C
AAGGCCCCGGGGGGCCACCCGGCCAAGG
19._GC-08-164-4-07
AAGGCCCCGGGGGGCCACCCGGCCAAGG
20._GC-01-116-6-13
AAGGCC_GGGGGGCCACCCGGCCAAGG
21._GU_133_/C
AAGGCC_GGGGGGCCACCCGGCCAAGG
22._RUQ_190
___CCGGGG_CCACCCGGCCAAGG
23._RUQ_190
AAGGCCCCGGGGAACCACCCGGCCAAGG
24._RUQ_190
____GGGGAA_ACCC__AA_
25._RUQ_190
___CCCC___ACCC____
26._GC-01-116-6-13
AAGGGGGGCCCC_GGACCCCC_AA_
27._MITC-000670
AAGGGGGGCCCC_GGACCCCC_AA_
 2930313233343536373839   
_Input profile
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
1._GC-08-164-4-07
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
2._GC-08-164-4-07
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
3._GC-01-116-6-13
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
4._GC-01-116-6-13
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
5._GC-01-116-6-13
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
6._GU_133_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
7._GU_133_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
8._GU_133_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
9._GU_133_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
10._GU_133_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
11._GC-08-164-4-07
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
12._GU_133_/C
GGAACC_CCAATTTTAAATGGX_XX_XX_X
13._GC-01-116-6-13
GGAACC_CCAATTTTAAATGGX_XX_XX_X
14._GC-08-164-4-07
GGAACCGGCC_TTTTAAATGGX_XX_XX_X
15._GC-08-164-4-07
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
16._GU_133_/C
GGAACCGGCC_TTTTAAATGGX_XX_XX_X
17._GU_133_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
18._GU_133_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
19._GC-08-164-4-07
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
20._GC-01-116-6-13
GGAACC_CCAATTTTAAATGGX_XX_XX_X
21._GU_133_/C
GGAACC_CCAATTTTAAATGGX_XX_XX_X
22._RUQ_190
_AACCGGCCAATTTTAA__X_XX_XX_X
23._RUQ_190
GGAACCGGCCAATTGTAAATGGX_XX_XX_X
24._RUQ_190
___GG____AA__X_XX_XX_X
25._RUQ_190
_AA_GGGGAATT_AA__X_XX_XX_X
26._GC-01-116-6-13
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X
27._MITC-000670
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X

Input profile: GU_133_/C

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

1._GU_133_/C GC-08-164-4-07

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._GU_133_/C GC-08-164-4-07

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

4._GU_133_/C GC-01-116-6-13

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

5._GU_133_/C GC-01-116-6-13

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._GU_133_/C

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

7._GU_133_/C

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

8._GU_133_/C

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

9._GU_133_/C

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

10._GU_133_/C

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

11._GU_133_/C GC-08-164-4-07

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

12._GU_133_/C

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

13._GU_133_/C GC-01-116-6-13

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._GU_133_/C GC-08-164-4-07

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._GU_133_/C GC-08-164-4-07

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._GU_133_/C

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

17._GU_133_/C

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

18._GU_133_/C

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

19._GU_133_/C GC-08-164-4-07

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._GU_133_/C GC-01-116-6-13

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

21._GU_133_/C

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

22._GU_133_/C RUQ_190

identical
24 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._GU_133_/C RUQ_190

96.2 %
39 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_133_/C RUQ_190

92.3 %
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._GU_133_/C RUQ_190

84.6 %
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

50 %
34 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25